--whitelist

Switch

--whitelist

Description

Switch to enable whitelisting of features in correlation-type analyses.

Argument and Default Value

None

Details

Requires --feat_whitelist. Argument of that switch gives either feature table as a whitelist (distinct features of that table) or arguments are a list of features to whitelist.

See also blacklist and feat_blacklist

Other Switches

Required Switches: --feat_whitelist Optional Switches: --loessplot --correlate fwflag_combo_rmatrix? fwflag_multir? --interaction_ddla Example Commands ================ .. code:doc:fwflag_block:: python

Only correlate with features agr and con: fwInterface.py -d tester7 -t statuses_er1 -c study_code -f 'feat$p_ridg_lbp_oceangft500$statuses_er1$study_code' --group_freq_thresh 0 --outcome_table outcomesFinal --outcomes DEPRESSION DM_UNCOMP EATING_DIS GI_SXS PREGNANCY PSYCHOSES STI --outcome_controls sex_int isBlack isWhite isHispanic ageTercile0 ageTercile1 ageTercile2 --correlate --rmatrix --whitelist --feat_whitelist agr con --output_name ./output