--ttest_feat_tables

Switch

--ttest_feat_tables

Description

Paired t-test of group_norms for all features in two feature tables with group_id as observations

Argument and Default Value

None

Details

Other Switches

Required Switches: Requires two feature tables to be given after -f Optional Switches: --group_freq_thresh is applied to both feature tables; only group_ids present in both and passing GFT will be taken as valid observations --csv writes output (t, p, and effect size d for each feature) to a file

Example Commands

fwInterface.py -d tester7 -t statuses_er1 -c study_code -f 'feat$cat_statuses_er1_cp_w$statuses_6moBB$study_code$16to16' 'feat$cat_statuses_er1_cp_w$statuses_6moAB$study_code$16to16' --ttest_feat_tables --group_freq_thresh 100 --csv --output_name /localdata/patrick/pregDLA/ttest_res/before_after